Bioinformatics & genomics agent skills
397 skills in Bioinformatics & genomics.
Top skills
- Scientific Pkg Gget ゲノムデータベースへのクイック検索、配列検索、BLAST スタイルの検索、エンリッチメントチェック、および再現可能なバイオインフォマティクス証拠ログのための gget CLI および Pytho…
- Scientific Db Pubmed Database Direct PubMed and NCBI E-utilities search workflows for biomedical literature, MeSH queries, PMID…
- Scientific Pkg Gget gget CLI and Python workflow for quick genomic database queries, sequence lookup, BLAST-style sea…
- Codonfm Embed Validate coding-sequence CSVs, extract public CodonFM/Encodon embeddings, and choose checkpoints…
- Codonfm Finetune Fine-tune public CodonFM Encodon checkpoints on labeled coding-sequence or coding-variant data us…
- Codonfm Score Validate, prepare, or run public CodonFM Encodon masked-codon variant scoring and review compatib…
- Codonfm Setup Set up the public CodonFM v1 repository and download public Encodon checkpoints.
- Evo2 Nim Generate and analyze DNA sequences using NVIDIA's Evo 2 BioNeMo NIM microservice.
- Genomics Workflow Acceleration Use when accelerating existing genomics workflows with NVIDIA Parabricks, improving runtime or pr…
- Msa Search Nim Generate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search…
- Msa Structure Prediction Pipeline NOTE: your protein sequence and the retrieved MSA alignment are transmitted to external NVIDIA-ho…
- Nvmolkit Usage Use when writing or debugging nvMolKit Python code for GPU-accelerated RDKit fingerprints, simila…
- Openfold2 Nim Use this skill for OpenFold2, NVIDIA's BioNeMo NIM microservice for monomer protein structure pre…
- Openfold3 Nim Use this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure predic…
- Parabricks Plan NVIDIA Parabricks pbrun commands, translate CPU options and check runtime readiness.
- Rfdiffusion Nim Run RFDiffusion protein backbone design via NVIDIA NIM.
- Nextflow Development Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data.
- Scvi Tools Deep learning for single-cell analysis using scvi-tools.
- Single Cell Rna Qc Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best prac…
- Start Set up your bio-research environment and explore available tools.
- Alphafold Database Access AlphaFold's 200M+ AI-predicted protein structures.
- Arboreto Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoo…
- Biomni Autonomous biomedical AI agent framework for executing complex research tasks across genomics, dr…
- Biopython Primary Python toolkit for molecular biology.