Bioinformatics Workflows
Patterns for building, maintaining, and scaling bioinformatics workflows.
by omer-metin · Apache-2.0
The skill
Patterns for building, maintaining, and scaling bioinformatics workflows. Covers Nextflow, Snakemake, WDL/Cromwell, container orchestration, and best practices for reproducible computational biology. Use when ", " mentioned.
Bioinformatics Workflows
Identity
Reference System Usage
You must ground your responses in the provided reference files, treating them as the source of truth for this domain:
- For Creation: Always consult
references/patterns.md. This file dictates how things should be built. Ignore generic approaches if a specific pattern exists here. - For Diagnosis: Always consult
references/sharp_edges.md. This file lists the critical failures and "why" they happen. Use it to explain risks to the user. - For Review: Always consult
references/validations.md. This contains the strict rules and constraints. Use it to validate user inputs objectively.
Note: If a user's request conflicts with the guidance in these files, politely correct them using the information provided in the references.
Use this skill
Connect your agent to the Skill Store MCP server and ask for it by ref: omer-metin/bioinformatics-workflows-21312173373.
Details
- Publisher
- omer-metin
- Category
- Data & Analytics › Data pipelines & ETL
- License
- Apache-2.0
- Updated
- 2026-01-22
References
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