Skill Store 33

Clawbio Pharmgx Reporter

Pharmacogenomic report from DTC genetic data (23andMe/AncestryDNA)

by aaaaqwq · MIT

The skill

Pharmacogenomic report from DTC genetic data (23andMe/AncestryDNA)

🦖 PharmGx Reporter

Generate a pharmacogenomic report from consumer genetic data (23andMe, AncestryDNA).

What it does

  1. Parses raw genetic data files (auto-detects 23andMe or AncestryDNA format)
  2. Extracts 31 pharmacogenomic SNPs across 12 genes
  3. Calls star alleles and determines metabolizer phenotypes
  4. Looks up CPIC drug recommendations for 51 medications
  5. Generates a markdown report with gene profiles, drug tables, and alerts

Genes covered

CYP2C19, CYP2D6, CYP2C9, VKORC1, SLCO1B1, DPYD, TPMT, UGT1A1, CYP3A5, CYP2B6, NUDT15, CYP1A2

Drug classes

Antiplatelet, opioids, statins, anticoagulants, PPIs, antidepressants (TCAs, SSRIs, SNRIs), antipsychotics, NSAIDs, oncology, immunosuppressants, antivirals

Usage

python pharmgx_reporter.py --input patient_data.txt --output report

Disclaimer

This tool is for research and educational purposes only. It is NOT a diagnostic device. Always consult a healthcare professional before making any medication decisions.

Use this skill

Connect your agent to the Skill Store MCP server and ask for it by ref: aaaaqwq/clawbio-pharmgx-reporter-34029625689.

Download SKILL.md · Markdown version

Details

Publisher
aaaaqwq
Category
Health & Life Sciences › Bioinformatics & genomics
License
MIT
Updated
2026-10-14

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