Delphine Lariviere writes skills that help an AI agent build and maintain Galaxy and IWC bioinformatics workflows, covering workflow development, testing, and batch orchestration for assembly pipelines. Her catalogue also reaches into interactive queries against biological databases, publication-quality figures and notebook analyses, and structured debugging and project organization. Taken together, her skills stand out for pairing bioinformatics workflow expertise with the practical habits of reproducible research.
Claude Global
33 skills · 23 stars
Bioinformatics Fundamentals Core bioinformatics concepts including SAM/BAM format, AGP genome assembly format, sequencing tec…
Bioinformatics Visualization Publication-quality bioinformatics figures - phylogenetic trees, genome browsers, iTOL datasets,…
Bioservices Unified Python interface to 40+ bioinformatics services (UniProt, KEGG, ChEMBL, Reactome, PSICQUIC).
Claude Collaboration Best practices for using Claude Code in team environments.
Claude Skill Management Expert guide for managing Claude Code global skills and commands.
Command Discipline Run shell commands bare — no decorative echo headers ("=== X ==="), no echo-then-cmd chains, no t…
Conda Recipe Expert in building and testing conda/bioconda recipes, including recipe creation, linting, depend…
Data Analysis Patterns Best practices for data aggregation, recalculation, and category management in scientific analyses.
Data Backup Smart automated backup system with skill integration.
Data Visualization Best practices for creating clear, accurate scientific visualizations with matplotlib, seaborn, a…
Documentation Best practices for session documentation - incremental summaries, fix reports, and audit trails
Documentation Organization Organize research project documentation - structure working files, prepare sharing packages, main…
Folder Organization Best practices for organizing project folders, file naming conventions, and directory structure s…
Galaxy Automation BioBlend and Planemo expertise for Galaxy workflow automation.
Galaxy Tool Wrapping Expert in Galaxy tool wrapper development, XML schemas, Planemo testing, and best practices for c…
Galaxy Training Material Expert in Galaxy Training Network (GTN) tutorial development.
Galaxy Workflow Development Expert in Galaxy workflow development, testing, and IWC best practices.
Galaxy Workflow Viz Generate Galaxy-branded workflow visualization SVGs for IWC workflows.
Genomeark Aws Access and navigate GenomeArk AWS S3 bucket - VGP assemblies, QC data, and species directory stru…
Gget Fast CLI/Python queries to 20+ bioinformatics databases.
Gnomad Database Query gnomAD (Genome Aggregation Database) for population allele frequencies, variant constraint…
Hackmd HackMD collaborative markdown - slide presentations, embedded SVG diagrams, and real-time editing…
Jupyter Notebook Analysis Best practices for creating comprehensive Jupyter notebook data analyses with statistical rigor,…
Managing Environments Best practices for managing development environments including Python venv and conda.
Obsidian Integration with Obsidian vault for managing notes, tasks, and knowledge when working with Claude.
Phylogenetics Phylogenetic tree analysis, visualization, annotation management, and iTOL troubleshooting
Project Sharing Prepare organized packages of project files for sharing at different levels - from summary PDFs t…
Scientific Publication Best practices for iterative refinement of publication-quality scientific figures.
Systematic Debugging Structured 4-phase debugging methodology.
Token Efficiency Token optimization best practices for cost-effective Claude Code usage.
Verification Before Completion Enforces evidence-based completion claims.
Vgp Pipeline VGP assembly pipeline - Galaxy workflow selection, execution patterns, QC checkpoints, and batch…
Workflow Maintenance Log Maintain per-workflow developer logs in Obsidian when working on Galaxy workflows.