Google DeepMind's skills help AI agents query biological and biomedical databases and run analyses on protein and genomic data. The listed skills cover pathway analysis and enrichment with Reactome, protein sequence similarity search using MMseqs2 and BLAST, variant effect prediction on gene expression and chromatin accessibility with the AlphaGenome API, bioactivity and drug target lookup in ChEMBL, protein expression data from the Human Protein Atlas, protein metadata from UniProt, scholarly literature search through OpenAlex, and domain and family annotation with InterPro.
Science Skills
40 skills · 3,421 stars · Apache-2.0
Alphafold Database Fetch And Analyze Retrieve and analyze AlphaFold predicted structures for a protein.
Alphagenome Atlas Website Links Constructs deep-links and URLs for the AlphaGenome Atlas website.
Alphagenome Single Variant Analysis Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), h…
Alphagenome Variant Impact Score Score, annotate, and analyze the functional impact of genetic variants using AlphaGenome Variant…
Chembl Database Query the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs…
Clinical Trials Database Query ClinicalTrials.gov via APIv2.
Clinvar Database Use when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign,…
Credentials Instructions for handling API keys and credentials safely, verifying their presence, and promptin…
Dbsnp Database Use when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's…
Embl Ebi Ols Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, defini…
Encode Ccres Database Query the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make…
Ensembl Database Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein…
Foldseek Structural Search Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGni…
Gnomad Database Query the Genome Aggregation Database (gnomAD).
Gtex Database Use when you want to retrieve quantitative RNA expression data and variant eQTL information from…
Human Protein Atlas Database Use when you want to retrieve semi-quantitative protein expression and spatial localisation data…
Interpro Database Identify domains, families, and sites in proteins; find all proteins in a family or sharing a dom…
Jaspar Database Query the JASPAR database for Transcription Factor (TF) binding profiles.
Literature Search Arxiv Search for scientific papers, preprints, and publications on arXiv.
Literature Search Biorxiv Browse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv.
Literature Search Europepmc Search Europe PMC for scientific literature and download open-access full texts and PDFs.
Literature Search Openalex Query the OpenAlex scholarly database for research papers, authors, institutions, topics, sources…
Ncbi Sequence Fetch Retrieve protein and nucleotide sequences from NCBI databases using E-utilities.
Openfda Database Query, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmeti…
Opentargets Database Query Open Targets Platform for target-disease associations, drug target discovery, tractability/…
Pdb Database Use when you want to search for or download experimentally-determined 3D structures for biomolecu…
Predictingthepast Ancient text restoration, attribution, dating, contextualization, and embedding via Aeneas (Latin…
Protein Sequence Msa Performs multiple sequence alignment of proteins with EBI Clustal Omega.
Protein Sequence Similarity Search Searches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive,…
Pubchem Database Query PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches,…
Pubmed Database Search PubMed for scientific literature, including published clinical trials.
Pymol Visualize, analyze, and render protein and molecular structures using PyMOL.
Quickgo Database Query the QuickGO and Evidence & Conclusion Ontology (ECO) REST API.
Reactome Database Query the Reactome database (Analysis and Content Services).
String Database Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and hom…
Ucsc Conservation And Tfbs Fetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites…
Unibind Database Queries the UniBind database for experimentally validated transcription factor (TF) binding sites.
Uniprot Database Access protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef.
Uv Checks whether the uv Python package manager is installed and installs it if missing.
Workflow Skill Creator Distills a completed user workflow or interaction into a reusable agent skill.